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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs2243480 1 rs6959002 chr7:65650496 RABGEF1 chr7:66093890-66276446:+ -0.57 -7.14 3.42E-12 Diabetic kidney disease
THCA cis rs41997 1 rs6959273 chr7:118041733 ANKRD7 chr7:117864712-117882782:+ 0.27 4.28 2.22E-5 Response to platinum-based chemotherapy in non-small-cell lung cancer
THCA cis rs13240464 1 rs6959670 chr7:110909169 IMMP2L chr7:110303110-111202538:- 0.17 3.71 0.000235 Schizophrenia
THCA cis rs875971 1 rs6961155 chr7:65933295 ASL chr7:65540776-65558321:+ -0.16 -4.18 3.49E-5 Aortic root size
THCA cis rs875971 1 rs6961155 chr7:65933295 GUSB chr7:65425675-65447246:- 0.27 5.27 2.11E-7 Aortic root size
THCA cis rs875971 1 rs6961155 chr7:65933295 RABGEF1 chr7:66093890-66276446:+ 0.65 14.02 1.14E-37 Aortic root size
THCA cis rs6978712 1 rs6961380 chr7:127148072 GRM8 chr7:126078652-126893147:- -0.35 -3.57 0.000398 Medication adherence in chronic diseases
THCA cis rs875971 1 rs6961717 chr7:65587537 ASL chr7:65540776-65558321:+ 0.16 4.27 2.34E-5 Aortic root size
THCA cis rs875971 1 rs6961717 chr7:65587537 GUSB chr7:65425675-65447246:- -0.27 -5.31 1.66E-7 Aortic root size
THCA cis rs875971 1 rs6961717 chr7:65587537 LOC729156 chr7:66274980-66309813:- -0.16 -3.49 0.000535 Aortic root size
THCA cis rs875971 1 rs6961717 chr7:65587537 RABGEF1 chr7:66093890-66276446:+ -0.66 -14.15 3.18E-38 Aortic root size
THCA cis rs875971 1 rs6961990 chr7:65888570 ASL chr7:65540776-65558321:+ -0.16 -4.14 4.19E-5 Aortic root size
THCA cis rs875971 1 rs6961990 chr7:65888570 GUSB chr7:65425675-65447246:- 0.26 4.98 8.85E-7 Aortic root size
THCA cis rs875971 1 rs6961990 chr7:65888570 LOC729156 chr7:66274980-66309813:- 0.16 3.44 0.00064 Aortic root size
THCA cis rs875971 1 rs6961990 chr7:65888570 RABGEF1 chr7:66093890-66276446:+ 0.66 14.26 1.04E-38 Aortic root size